#!/bin/csh
#note this is an example of how to process Z first and still lp for a
corrupt point in Y
var2pipe -in ./fid -noaswap
-aqORD 1 \
-xN
2048
-yN
104
-zN
56 \
-xT
1024
-yT
52
-zT
28 \
-xMODE Complex
-yMODE Complex
-zMODE Rance-Kay \
-xSW 12500.000
-ySW 11000.000
-zSW 1264.023 \
-xOBS 599.737
-yOBS 150.811
-zOBS
60.778 \
-xCAR
4.821 -yCAR
52.941 -zCAR
121.785 \
-xLAB
H1
-yLAB
C13
-zLAB
N15 \
-ndim
3 -aq2D
States
\
-out ./data/test%03d.fid
-verb -ov
xyz2pipe -in data/test%03d.fid
-x -verb -first 1 -last
28 \
| nmrPipe -fn
SOL
\
| nmrPipe -fn SP -off 0.5
-end 0.98 -pow 2 -c 0.5 \
| nmrPipe -fn ZF
-auto
\
| nmrPipe -fn
FT
\
| nmrPipe -fn PS -p0
33.6 -p1 0.0
-di
\
| nmrPipe -fn EXT -x1 10ppm
-xn 6ppm
-sw
\
| pipe2xyz -out lp/test%03d.ft1 -x
#this is the bad plane in Y so we read it in FT X and TP to Y
#then LP corrupted point and then TP back to X
xyz2pipe -in
data/test%03d.fid -x -verb -first 29 -last
30 \
| nmrPipe -fn
SOL
\
| nmrPipe -fn SP -off 0.5
-end 0.98 -pow 2 -c 0.5 \
| nmrPipe -fn ZF
-auto
\
| nmrPipe -fn
FT
\
| nmrPipe -fn PS -p0
33.6 -p1 0.0
-di
\
| nmrPipe -fn EXT -x1 10ppm
-xn 6ppm
-sw
\
| nmrPipe -fn
TP
\
| nmrPipe -fn LP -before -x1 16
-pred 1 \
| nmrPipe -fn
TP
\
| pipe2xyz -out lp/test%03d.ft1 -x
xyz2pipe -in data/test%03d.fid
-x -verb -first 31 -last
58 \
| nmrPipe -fn
SOL
\
| nmrPipe -fn SP -off 0.5
-end 0.98 -pow 2 -c 0.5 \
| nmrPipe -fn ZF
-auto
\
| nmrPipe -fn
FT
\
| nmrPipe -fn PS -p0
33.6 -p1 0.0
-di
\
| nmrPipe -fn EXT -x1 10ppm
-xn 6ppm
-sw
\
| pipe2xyz -out lp/test%03d.ft1 -x
xyz2pipe -in lp/test%03d.ft1 -z
-verb
\
| nmrPipe -fn SP -off 0.5
-end 0.95 -pow 2 -c 0.5 \
| nmrPipe -fn ZF
-auto
\
| nmrPipe -fn
FT
\
| nmrPipe -fn PS -p0 0.0
-p1 0.0
-di
\
| pipe2xyz -out lp/test%03d.ft2 -z
xyz2pipe -in lp/test%03d.ft2 -y
-verb
\
| nmrPipe -fn LP -fb -ord
10
\
| nmrPipe -fn SP -off 0.5
-end 0.98 -pow 2 -c 0.5 \
| nmrPipe -fn ZF
-auto
\
| nmrPipe -fn
FT
\
| nmrPipe -fn PS -p0 0 -p1
0
-di
\
| pipe2xyz -out lp/test%03d.ft3 -y